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Clustal Omega

Clustal Omega is a MSA online program that uses trees and HMM profile-profile techniques to generate alignments between two or more sequences.

If you want to give it a try, here you can introduce your protein sequences in FASTA format, UniProt ids or upload a file and perform a MSA.

INPUT- Enter your input sequences

Introduce a set of protein sequences in FASTA format

Or, introduce the UniProt id separated by commas and without spaces

Or, upload a file:

OUTPUT- Choose the output format

Options available: