CLUSTAL-Omega

Performing Multiple Sequence Alignment with Clustal-Omega

Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences. For more information: Clustal Omega Help & Documentation

STEP 1 - Enter your input sequences

Uniprot IDs Enter a set of Uniprot IDs separated by commas (e.g: P69905,P01942,P13786).

Protein sequences (in FASTA) Paste a set of protein sequences in FASTA format (e.g.: >P69905...).

Upload multi-FASTA file:

STEP 2 - Set your parameters

Output format:

FASTA Clustal MSF PHYLIP SELEX STOCKHOLM VIENNA